World Model: A structured data store that synthesizes information from all agents, serving as the central 'brain' to propose next steps and maintain consistency
GWAS: Genome-Wide Association Study—an observational study of a genome-wide set of genetic variants in different individuals to see if any variant is associated with a trait
pQTL: Protein Quantitative Trait Loci—genomic loci that explain variation in expression levels of proteins
Mendelian Randomization: A method using measured variation in genes of known function to examine the causal effect of a modifiable exposure on disease
SHAP: SHapley Additive exPlanations—a game theoretic approach to explain the output of any machine learning model
TFBS: Transcription Factor Binding Sites—locations on DNA where transcription factors (proteins) bind to control the rate of transcription of genetic information
SFT: Supervised Fine-Tuning—training a model on labeled examples to adapt it to a specific task
RAG: Retrieval-Augmented Generation—technique to optimize LLM output by referencing an authoritative knowledge base
Jupyter notebook: An open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text